Level III One-Day Workshop Syllabus
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Prerequisites
Required:
The pace of the workshop assumes users are very comfortable navigating through menus, graphical interface, and know the basics of data analysis. Users should have worked with multiple data sets in GeneSpring.
Recommended:
Attend the Level II Workshop or attend the following online presentations: "Global Error Model", and "Basic Statistics for GeneSpring".
Syllabus
8:30AM | Welcome & Introductions |
Early morning | Quick Review:
- Summary of workflow
- Gene and sample quality control filtering
Find Similar Samples
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| | Break |
Mid morning |
Principal Components Analysis
- PCA on genes
- PCA on conditions
Statistical Analysis
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12:00PM | Lunch |
Early afternoon |
More Clustering Methods
- k-means
- Self-Organizing Maps (SOM)
- QT Clustering
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| | Break |
Late afternoon |
Class Prediction Tool:
Homology Tool
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4:30PM | Class Ends
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