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Level III One-Day Workshop Syllabus

| New Features in GeneSpring | Statistics and Algorithms | Data Analysis-Level I |
| Data Analysis-Level II | Data Analysis-Level III |
|Dates and Locations|

Prerequisites

Required:
The pace of the workshop assumes users are very comfortable navigating through menus, graphical interface, and know the basics of data analysis. Users should have worked with multiple data sets in GeneSpring.

Recommended:
Attend the Level II Workshop or attend the following online presentations: "Global Error Model", and "Basic Statistics for GeneSpring".

Syllabus

8:30AM

Welcome & Introductions

Early morning

Quick Review:

  • Summary of workflow
  • Gene and sample quality control filtering

Find Similar Samples

 

Break

Mid morning

Principal Components Analysis

  • PCA on genes
  • PCA on conditions

Statistical Analysis

  • 2-way ANOVA

12:00PM

Lunch

Early afternoon

More Clustering Methods

  • k-means
  • Self-Organizing Maps (SOM)
  • QT Clustering
 

Break

Late afternoon

Class Prediction Tool:

  • Theory and applications

Homology Tool

4:30PM

Class Ends




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