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Level I One-Day Workshop Syllabus

| New Features in GeneSpring | Statistics and Algorithms | Data Analysis-Level I |
| Data Analysis-Level II | Data Analysis-Level III |
|Dates and Locations|

Prerequisites

Required:
The ability to understand terminology specific to computer usage ("left-click","minimize"), and feel comfortable navigating interfaces of common software applications such as Microsoft Office.

Recommended:
Read the Tutorial in GeneSpring (Help menu > Tutorial) to become familiar with the interface. Begin exploring features using sample data that comes with GeneSpring.

Syllabus

8:30AM

Welcome and Refreshments

Early morning

Introduction to Gene Expression Analysis

  • User interface & terminology
  • Importing genomes and expression data
  • Genome annotation and ontologies
 

Break

Late morning

Setting Up Experiments

  • 1- and 2-color data normalization
  • Creating Experiments
  • Interpretations and Parameters

12:00PM

Lunch

Early afternoon

Performing Quality Control

  • Quality control on samples
  • Quality control on genes

Fold Change Analysis

 

Break

Late afternoon

Working with Gene Lists

  • Venn diagrams
  • Gene List Editor
  • Filter on Gene List Numbers

Exporting Data

  • Export GeneSpring data files
  • Export data to Excel®
  • Export graphics

4:30PM

Class Ends




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